Set reordering to id=[0] and name=[default]
Process file[C:\Users\aritz.adin.DYC\AppData\Local\Temp\RtmpqmcXBA\file42836a44b30/Model.ini] threads[4] max.threads[4] blas_threads[1] nested[4:1]
R-INLA build date=[Mon Feb 22 11:58:09 PM +03 2021]
pardiso-library installed and working? = [no]
PRIOR->to_theta = [function (x) <<NEWLINE>>log(x)]
read n=[13582] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff]
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 0/6791  (idx,y) = (0, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 1/6791  (idx,y) = (1, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 2/6791  (idx,y) = (2, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 3/6791  (idx,y) = (3, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 4/6791  (idx,y) = (4, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 5/6791  (idx,y) = (5, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 6/6791  (idx,y) = (6, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 7/6791  (idx,y) = (7, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 8/6791  (idx,y) = (8, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4289087ff] 9/6791  (idx,y) = (9, 0)
read n=[20373] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428729f75e]
PRIOR0->to_theta = [function (x) <<NEWLINE>>log(x)]
PRIOR1->from_theta=[function (x) <<NEWLINE>>exp(x)/(1 + exp(x))]
PRIOR1->to_theta = [function (x) <<NEWLINE>>log(x/(1 - x))]
PRIOR1->expression=[expression:    a = 1;    b = 1;    beta = exp(theta)/(1+exp(theta));    logdens = lgamma(a+b)-lgamma(a)-lgamma(b)+(a-1)*log(beta)+(b-1)*log(1-beta);    log_jacobian = log(beta*(1-beta));    return(logdens+log_jacobian)]
read n=[13582] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a]
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 0/6791  (idx,y) = (0, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 1/6791  (idx,y) = (1, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 2/6791  (idx,y) = (2, 2)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 3/6791  (idx,y) = (3, 3)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 4/6791  (idx,y) = (4, 4)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 5/6791  (idx,y) = (5, 5)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 6/6791  (idx,y) = (6, 6)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 7/6791  (idx,y) = (7, 7)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 8/6791  (idx,y) = (8, 8)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42818e4634a] 9/6791  (idx,y) = (9, 9)
read extra constraint from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4282f3e4a79]
read n=[13582] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58]
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 0/6791  (idx,y) = (0, 0)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 1/6791  (idx,y) = (1, 79)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 2/6791  (idx,y) = (2, 2)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 3/6791  (idx,y) = (3, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 4/6791  (idx,y) = (4, 2)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 5/6791  (idx,y) = (5, 3)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 6/6791  (idx,y) = (6, 2)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 7/6791  (idx,y) = (7, 2)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 8/6791  (idx,y) = (8, 2)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42865b77b58] 9/6791  (idx,y) = (9, 4)
read extra constraint from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42853be17c7]
read n=[13582] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41]
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 0/6791  (idx,y) = (0, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 1/6791  (idx,y) = (1, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 2/6791  (idx,y) = (2, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 3/6791  (idx,y) = (3, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 4/6791  (idx,y) = (4, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 5/6791  (idx,y) = (5, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 6/6791  (idx,y) = (6, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 7/6791  (idx,y) = (7, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 8/6791  (idx,y) = (8, 1)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428a451e41] 9/6791  (idx,y) = (9, 1)
read n=[13582] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b]
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 0/6791  (idx,y) = (0, 0.685842)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 1/6791  (idx,y) = (1, 1.13072)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 2/6791  (idx,y) = (2, 1.69179)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 3/6791  (idx,y) = (3, 0.267203)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 4/6791  (idx,y) = (4, 1.0912)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 5/6791  (idx,y) = (5, 1.00966)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 6/6791  (idx,y) = (6, 0.854489)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 7/6791  (idx,y) = (7, 1.35762)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 8/6791  (idx,y) = (8, 0.873528)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file4285228251b] 9/6791  (idx,y) = (9, 1.05542)
read n=[13582] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7]
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 0/6791  (idx,y) = (0, -0.857994)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 1/6791  (idx,y) = (1, -0.21701)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 2/6791  (idx,y) = (2, -0.357301)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 3/6791  (idx,y) = (3, -0.160977)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 4/6791  (idx,y) = (4, -1.03337)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 5/6791  (idx,y) = (5, -0.600828)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 6/6791  (idx,y) = (6, -0.404157)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 7/6791  (idx,y) = (7, 1.16385)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 8/6791  (idx,y) = (8, -1.03337)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file428704443c7] 9/6791  (idx,y) = (9, -0.00581277)
read n=[13582] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae]
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 0/6791  (idx,y) = (0, -0.893717)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 1/6791  (idx,y) = (1, 0.381177)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 2/6791  (idx,y) = (2, 0.0177109)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 3/6791  (idx,y) = (3, 0.125612)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 4/6791  (idx,y) = (4, 0.231118)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 5/6791  (idx,y) = (5, 0.609321)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 6/6791  (idx,y) = (6, 0.61102)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 7/6791  (idx,y) = (7, 0.674459)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 8/6791  (idx,y) = (8, 0.518469)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42867fe63ae] 9/6791  (idx,y) = (9, 0.440555)
read n=[13582] entries from file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4]
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 0/6791  (idx,y) = (0, 3.64199)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 1/6791  (idx,y) = (1, 1.49326)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 2/6791  (idx,y) = (2, 1.66867)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 3/6791  (idx,y) = (3, 1.397)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 4/6791  (idx,y) = (4, 1.80313)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 5/6791  (idx,y) = (5, 1.63731)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 6/6791  (idx,y) = (6, 1.94626)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 7/6791  (idx,y) = (7, 2.06757)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 8/6791  (idx,y) = (8, 1.87997)
file=[C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42828b423d4] 9/6791  (idx,y) = (9, 1.59814)
Index table: number of entries[8], total length[22068]
Strategy:         Use a mean-skew corrected Gaussian by fitting a Skew-Normal
Use linear approximation to log(|Q +c|)? Yes
Method:         Compute the derivative exact
Step length to compute derivatives numerically:         0.000100002
Stencil to compute derivatives numerically:         5
Cutoff value to construct local neigborhood:         0.0001
Log calculated marginal for the hyperparameters:         On
Integration strategy:         Automatic (GRID for dim(theta)=1 and 2 and otherwise CCD)
Difference in log-density limit (GRID only):         6.000
Skip configurations with (presumed) small density (GRID only):         On
Gradient is computed using Central difference with step-length 0.005000
Hessian is computed using Central difference with step-length 0.070711
Hessian matrix is forced to be a diagonal matrix? [No]
Compute effective number of parameters? [Yes]
Maximum number of function evaluations [100000]
To stabilise the numerical optimisation:
Open file [C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42853b92d90] at location [0]
Open file [C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42853b92d90] at location [173179]
Open file [C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42853b92d90] at location [346358]
Open file [C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42853b92d90] at location [519537]
Open file [C:/Users/aritz.adin.DYC/AppData/Local/Temp/RtmpqmcXBA/file42836a44b30/data.files/file42853b92d90] at location [692716]
inla_build: check for unused entries in[C:\Users\aritz.adin.DYC\AppData\Local\Temp\RtmpqmcXBA\file42836a44b30/Model.ini]
Found optimal reordering=[metis] nnz(L)=[390013] and use_global_nodes(user)=[no]
Smart optimise part I: estimate gradient using forward differences
Iter=4 |grad|=35.8 |x-x.old|=0.641 |f-f.old|=19.2 Reached numerical limit!
Smart optimise part II: estimate gradient using central differences
Smart optimise part II: restart optimiser
Iter=3 |grad|=19.8 |x-x.old|=0.417 |f-f.old|=1.77 Reached numerical limit!
Optim: Number of function evaluations = 204
Compute the Hessian using central differences and step_size[0.0707107]. Matrix-type [dense]
Smart optimise part III: estimate Hessian using forward differences
Mode not sufficient accurate; switch to a stupid local search strategy.
Smart optimise part III: Hessian seems fine, keep it
StDev/Correlation matrix (scaled inverse Hessian)
Compute corrected stdev for theta[0]: negative 0.913  positive 1.097
Compute corrected stdev for theta[1]: negative 1.003  positive 0.982
Compute corrected stdev for theta[2]: negative 0.580  positive 1.306
Compute corrected stdev for theta[3]: negative 1.491  positive 1.214
Combine the densities with relative weights:
Expected effective number of parameters: 2443.862(59.284),  eqv.#replicates: 2.779
Effective number of parameters ... 2417.42
Marginal likelihood: Integration -14384.675 Gaussian-approx -14384.525
Compute the marginal for each of the 4 hyperparameters
Compute the marginal for theta[0] to theta[3] using numerical integration...
Compute the marginal for theta[0] to theta[3] using numerical integration... Done.
Compute the marginal for the hyperparameters... done.
Wall-clock time used on [C:\Users\aritz.adin.DYC\AppData\Local\Temp\RtmpqmcXBA\file42836a44b30/Model.ini]
Number of fn-calls= 299 with 1.553 sec/fn-call